| MLS SuperDraft (Since 2000) | ||||
| Year | Round | Pick | Player | Franchise |
| 2015 | 1 | 4 | Brandon Vincent | Chicago Fire |
| 2 | 34 | Eric Verso | Montreal Impact | |
| 4 | 69 | Ty Thompson | San Jose Earthquakes | |
| 2014 | 1 | 9 | JJ Koval | San Jose Earthquakes |
| 2011 | 1 | 17 | Bobby Warshaw | FC Dallas |
| 2005 | 4 | 42 | James Twellman | San Jose Earthquakes |
| 2004 | 1 | 2 | Chad Marshall | Columbus Crew |
| 3 | 27 | Mike Wilson | San Jose Earthquakes | |
| 2003 | 1 | 6 | Todd Dunivant | San Jose Earthquakes |
| 3 | 23 | Roger Levesque | San Jose Earthquakes | |
| 4 | 33 | Taylor Graham | Kansas City Wizards | |
| 5 | 46 | Johanes Maliza | San Jose Earthquakes | |
| 2002 | 1 | 12 | Lee Morrison | Dallas Burn |
| 3 | 34 | Matt Moses | Colorado Rapids | |
| 4 | 60 | Aaron Biddle | San Jose Earthquakes | |
| 5 | 67 | Scott Leber | Columbus Crew | |
| 2001 | 1 | 4 | Ryan Nelsen | D.C. United |
| 4 | 43 | Adam Zapala | Dallas Burn | |
| 5 | 49 | Corey Woolfolk | San Jose Earthquakes | |
| 2000 | 4 | 40 | Andrew Hemmerich | San Jose Earthquakes |
| MLS College Draft (1996-99) | ||||
| Year | Round | Pick | Player | Franchise |
| 1999 | 2 | 21 | Jamie Clark | San Jose Clash |
| MLS Inaugural Draft (1996) | ||||
| Year | Round | Pick | Player | Franchise |
| 1996 | 4 | 38 | Rhett Harty | San Jose Clash |
| 5 | 44 | Mark Semioli | Los Angeles Galaxy | |
| MLS Supplemental Draft (2003, 2005-08, 2011-13) | ||||
| Year | Round | Pick | Player | Franchise |
| 2013 | 1 | 15 | Adam Jahn | San Jose Earthquakes |
| 2011 | 1 | 16 | Ryan Thomas | Los Angeles Galaxy |
| 2008 | 4 | 53 | Andrew Kartunen | Kansas City Wizards |
| 2005 | 2 | 18 | Robby Fulton | San Jose Earthquakes |
| 3 | 36 | Andrew Terris | D.C. United | |